SAMSWiki/WebDocumentation/HowTo/GeNeral

• 1) Sequence data

The different sequence data sets for the current project are listed as ESTs, TCs or singlets. Choose one data set to browse the computational results.

The table lists the best result (e.g., observation) of each tool that has been computed. By clicking on the name of a sequence (e.g., region), you will get a list of all observations computed for this region with this tool.

In case you have chosen either EST or singlet data set, you will additionally get the sequence itself, a visualization of the quality and vector clipped regions and eventually further information on the assembly. By choosing TCs, the additional information consists of the consensus sequence, the list of ESTs used in this TC, as well as a graphical visualization of the assembly. By directly clicking on a specific results description, the results of this particular tool for all regions will be listed.

• /ESTs
• /TCs
• /Singlets
• 2) Search

This option allows you to search by specifying parameters such as:

• Name (exact or regular expression)
• Gene name (exact or regular expression)
• Gene product -CDS only- (exact or regular expression)
• Observation description (contains or regular expression)
• Annotation description (contains or regular expression)
• Annotation comment (contains or regular expression)