GenDBWiki/CoreDocumentation

GenDB CORE Documentation

The GenDB CORE documentation is intended to provide some general background knowledge about the GenDB annotation system. You should read the following chapters if you are planning to setup the system in order to annotate genomes.

• CoreScripts: This section describes the most important scripts for running a standard genome annotation pipeline.
• /RegionPrediction: In this part you can find a number of details about the GenDB region prediction components.
• /FunctionPrediction: Tools used for function prediction within the GenDB system are described here.
• /AdditionalScripts: Additional scripts for special purpose tasks are explained in this last section of the GenDB CORE documentation.

For writing your own programs using the GenDB API please take a look at the GenDB developer section and the API documentation.