GenDBWiki/WebDocumentation/DialogWindows/OrthologViewer

Ortholog Viewer

The Ortholog Viewer is a tool that shows ortholog CDS in similar genomes. The orthologs have to be computed before.

What should be done to use this tool?

1. create Bidirectional-Blast-Tools in the project with: create_genome_compare_tools.pl
   
2. Run the Tool for each Contig-combination with: submit_job.pl
   
3. Run set_biderectional_project_config.pl.
   
4. Run compute_orthologs.pl to create ortholog-observations
   
5. Use the tool
   

Contig View

On the right side of the image you can do the following:

• Annotate the Reference
• Copy Annotation
• View multiple alignment

Annotate the reference

You can select one CDS as reference and annotate it (or check if the annotation is correct), using the Annotation Dialog.

- select the desired CDS as Reference

- click the "Annotate Reference" - button

- do your annotation

Copy Annotation

You can copy the annotation from one CDS to others.