EMMAWiki/AdministratorDocumentation/ArraylayoutGuide: Difference between revisions
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An arraylayout is essential for your microarray experiment. All further processing and analysis is based on the layout. A wrong layout leads to a wrong calculation! | An arraylayout is essential for your microarray experiment. All further processing and analysis is based on the layout. A wrong layout leads to a wrong calculation! | ||
In order to provide MIAME compliant annotations, mandatory fields in the ADF format for EMMA are the same fields as in [ | In order to provide MIAME compliant annotations, mandatory fields in the ADF format for EMMA are the same fields as in [http://www.ebi.ac.uk/arrayexpress/ ArrayExpress]. | ||
Please have a look at the [http://www.ebi.ac.uk/~rocca/ADF/ADFGUIDELINES.htm ADF Guidelines at the EBI] for detailed descriptions and [http://www.ebi.ac.uk/~rocca/ADF/ADFchecklist.htm ADF Checklist at the EBI] for a quick overview and checklist before you upload your ADF-file. | Please have a look at the [http://www.ebi.ac.uk/~rocca/ADF/ADFGUIDELINES.htm ADF Guidelines at the EBI] for detailed descriptions and [http://www.ebi.ac.uk/~rocca/ADF/ADFchecklist.htm ADF Checklist at the EBI] for a quick overview and checklist before you upload your ADF-file. | ||
If you have a layout in the GAL-format, this can easily be converted to the ADF-format using the [http://www.ebi.ac.uk/cgi-bin/microarray/gal2adf2mart.pl spotter file to ADF converter at the EBI]. | If you have a layout in the GAL-format, this can easily be converted to the ADF-format using the [http://www.ebi.ac.uk/cgi-bin/microarray/gal2adf2mart.pl spotter file to ADF converter at the EBI]. | ||
Revision as of 16:00, 20 October 2005
Arraylayout Guidelines
An arraylayout is essential for your microarray experiment. All further processing and analysis is based on the layout. A wrong layout leads to a wrong calculation! In order to provide MIAME compliant annotations, mandatory fields in the ADF format for EMMA are the same fields as in ArrayExpress.
Please have a look at the ADF Guidelines at the EBI for detailed descriptions and ADF Checklist at the EBI for a quick overview and checklist before you upload your ADF-file.
If you have a layout in the GAL-format, this can easily be converted to the ADF-format using the spotter file to ADF converter at the EBI.