GenDBWiki/WebDocumentation/MainViews/ContigView

The GenDB web Contig View

1	Menu Bar	The menu bar on top of the window is the main navigation bar for the GenDB web interface.
		Contig shows you a list of available contigs in this project. This list is ordered by ascending length of the contigs.
		Tools consist currently of to tools. One is the circular plot to view the genome as a circle and the second is PatScan which can search for patterns in a sequence
		With Classification you can choose between three common classification systems namely GO, KEGG and COG
		Preferences has a submenu to call the preferences dialog and an option to view/hide the region observations in the Contig View
2	Contig View	The Contig View displays all visible regions of the selected contig. The visibility and colors can be adjusted in the preferences
3	Plot View	The Plot View can display the GC-Plot, GC-Skew and the Frame-Plot. Each plot can be toggled with a click on its appropriate box in the legend
4	QuickNav Bar	The Quick Navigation Bar is used to easily jump to specific parts of the contig while displaying the current position with the red box. Simply click to move the red box
5	Region Info	This part shows all informations about the currently selected region. These are categorized in 3 categories: Region info, Annotation Region and Annotation Function
6	Contig Info	This part summarizes some statistics of the selected contig
7	Action View	This view replaces the right mouse button of the GenDB-GUI. All the actions from the right-click-menu moved to here
8	Navigation	With the arrows at the upper right/left corner you can navigate up-/downstream the contig