GenDBWiki/WebDocumentation/MainMenu: Difference between revisions
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In the 'Contigs' menu all the contigs in the GenDB project are listed and can be selected. Choosing a | In the 'Contigs' menu all the contigs in the GenDB project are listed and can be selected. Choosing a | ||
contig redisplays the [ | contig redisplays the [[GenDBWiki/WebDocumentation/MainViews/ContigView|Contig View]] jumping to the | ||
beginning of the selected contig. | beginning of the selected contig. | ||
Revision as of 15:25, 28 October 2011
GenDB-Web - Main Menu
The main navigation in the Web Interface is done using the black menu bar in the main window.
In the 'Contigs' menu all the contigs in the GenDB project are listed and can be selected. Choosing a contig redisplays the Contig View jumping to the beginning of the selected contig.
The 'Tools' menu contains tools working on the whole genome. One tool is the [wiki:GenDBWiki/WebDocumentation/DialogWindows/CircularPlot Circular Plot] which displays the complete contig chosen graphically. Another implemented tool is searching patterns in the genome via [wiki:GenDBWiki/WebDocumentation/DialogWindows/PatScan PatScan]
Clicking the 'Search' menu provides a [wiki:GenDBWiki/WebDocumentation/DialogWindows/SearchDialog dialog window for the search in the GenDB regions].
For the classification actually three different views are available. The [wiki:GenDBWiki/WebDocumentation/MainViews/KEGGView KEGG View] shows the data in its metabolic contexts. The [wiki:GenDBWiki/WebDocumentation/MainViews/COGView COG View] and the [wiki:GenDBWiki/WebDocumentation/MainViews/GOView GO View] show the functional classifications for the genes in a GenDB project.
The 'Preferences' menu gives access to the [wiki:GenDBWiki/WebDocumentation/DialogWindows/ConfigDialog Config Dialog]. Another possibility is to turn the Region Observations on and off in the [wiki:GenDBWiki/WebDocumentation/MainViews/ContigView Contig View].
With 'Logout' the user can end his GenDB session.