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- 16:26, 24 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ComputeJobStatistics (hist | edit) [94 bytes] Agoesman (talk | contribs) (Created page with "== Compute Job Statistics == Compute Job Statistics Dialog.")
- 16:24, 24 November 2011 GenDBWiki/WebDocumentation/DialogWindows/WholeGenomePlot (hist | edit) [78 bytes] Agoesman (talk | contribs) (Created page with "== Whole Genome Plot == GenDB Whole Genome Plot.")
- 16:09, 24 November 2011 GenDBWiki/WebDocumentation/DialogWindows/DeleteRegion (hist | edit) [187 bytes] Agoesman (talk | contribs) (Created page with "The button for deleting regions is only displayed for project maintainers, developers, and chiefs (see also GenDB rights and roles). [[File:DeleteRegion.png|GenDB Delete Region ...")
- 15:08, 24 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ExportGenBankEMBL (hist | edit) [68 bytes] Agoesman (talk | contribs) (Created page with "GenDB EMBL and GenBank export dialog.")
- 15:02, 24 November 2011 GenDBWiki/WebDocumentation/DialogWindows/DeleteContig (hist | edit) [53 bytes] Agoesman (talk | contribs) (Created page with "Delete contig dialog.")
- 12:04, 22 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ToolStatus (hist | edit) [185 bytes] Agoesman (talk | contribs) (Created page with "Tool Status Dialog Screenshot of the GenDB Tool Status Dialog")
- 22:05, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/Virtual2DGel (hist | edit) [402 bytes] Agoesman (talk | contribs) (Created page with "= Virtual2D-Gel = This graph depicts the isoelectrical point over the log10 of the molecular mass. Each point is a region of the contig. To display the attributes of this region...")
- 22:03, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/CreateMutation (hist | edit) [1,316 bytes] Agoesman (talk | contribs) (Created page with "= Create Mutation Dialog = This dialog lets you insert special region (e.g. mutations) which belong to certain strains of an organism. The wizard guides you through the process ...")
- 22:02, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/MultiAnnotator (hist | edit) [923 bytes] Agoesman (talk | contribs) (Created page with "= Multi Annotator Dialog = The Multi Annotator Dialog lets you annotate more than one gene at once. In the right column of the table, there are the name of the region, the funct...")
- 22:02, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ExportCDS (hist | edit) [368 bytes] Agoesman (talk | contribs) (Created page with "= Export CDSs Dialog = Use this dialog to export certain regions as FASTA files. You have the choice between AA-sequence, DNA-Sequence and plaintext CDS information. '''NOTE:'''...")
- 22:01, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/CreateRegionDialog (hist | edit) [752 bytes] Agoesman (talk | contribs) (Created page with "= Create Region Dialog = This dialog gives the user the ability to create regions that have not been created automatically in GenDB. attachment:createregion.png Enter start an...")
- 21:59, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ConfigDialog (hist | edit) [2,342 bytes] Agoesman (talk | contribs) (Created page with "= The Configuration Dialog = The user settings for the complete GenDB web interface can be edited in this dialog. This includes colors, numbers of observations for different too...")
- 21:58, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/AASequenceDialog (hist | edit) [224 bytes] Agoesman (talk | contribs) (Created page with "= Amino acid sequence dialog = Displays the AA sequence of the current region. The sequence can be saved as fasta. attachment:aasequence.png")
- 21:57, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/DNASequenceDialog (hist | edit) [300 bytes] Agoesman (talk | contribs) (Created page with "= DNA Sequence Dialog = This dialog shows the nucleotides of the selected region. Set the threshold for up- and downstream nucleotides to be shown. The sequence can be saved in ...")
- 21:54, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ReportDialog (hist | edit) [593 bytes] Agoesman (talk | contribs) (Created page with "= Report Dialog = The Report Dialog gives a detailed description of a region. On the upper left side information of the region itself are shown, including the start and stop on ...")
- 21:53, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ShowSequenceDialog (hist | edit) [1,054 bytes] Agoesman (talk | contribs) (Created page with "= Show Sequence Dialog = This dialog shows a graphical representation of the sequence of a region. In the middle of the window, you can find both strands of the DNA sequence of ...")
- 21:52, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/CircularPlot (hist | edit) [1,160 bytes] Agoesman (talk | contribs) (Created page with "= Circular Plot = The Circular Plot shows all genes of both strands in a circular view. In this example, the colors refer to the reading frames of the regions as referred to in ...")
- 21:50, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/RegionEditor (hist | edit) [869 bytes] Agoesman (talk | contribs) (Created page with "= Region Editor = In the region editor the start of a region can be edited. For coding regions, it is not possible to edit a stop. In the upper left table the attributes of a r...")
- 21:49, 11 November 2011 GenDBWiki/WebDocumentation/DialogWindows/ObservationDialog (hist | edit) [1,804 bytes] Agoesman (talk | contribs) (Created page with "= Observations Dialog = The Observations Dialog displays all computed tool results for a GenDB region in a table. In the first column a graphical representation of the part of t...")
- 22:01, 10 November 2011 GenDBWiki/WebDocumentation/MainViews/GOView (hist | edit) [2,290 bytes] Agoesman (talk | contribs) (Created page with "= GO (GeneOntology) View = attachment:goparc2.2_GO_view.png | 1 | search GO numbers | Enter a GO number in this field (without leading ''GO'') and hit ''search'' to start a sea...")
- 21:47, 10 November 2011 GenDBWiki/WebDocumentation/MainViews/COGView (hist | edit) [1,762 bytes] Agoesman (talk | contribs) (Created page with "= COG (Cluster of orthologous groups) Browser = attachment:goparc_COG_view.png || 1 || search COG number || Typing in a valid COG classification number (without leading 'COG') ...")
- 16:22, 10 November 2011 GenDBWiki/WebDocumentation/MainViews/KEGGView (hist | edit) [1,664 bytes] Agoesman (talk | contribs) (Created page with "= The GenDB web KEGG view = KEGG Browser || 1 || search EC numbers || Enter an EC number in the field provided and hit search to search for pathways c...")
- 17:29, 31 October 2011 GenDBWiki/DeveloperDocumentation/ContributedScripts (hist | edit) [2,311 bytes] Agoesman (talk | contribs) (Created page with "= Contributed GenDB Scripts = The following list of scripts has been contributed by various developers working with the GenDB API (only version 2.0 and higher). Since most of th...")
- 17:28, 31 October 2011 GenDBWiki/DeveloperDocumentation/GenDBProgrammingTutorial (hist | edit) [14,957 bytes] Agoesman (talk | contribs) (Created page with "= GenDB Programming Tutorial = In the following sections you can learn how to write a simple GenDB script that fetches all coding sequences (CDS) of a contig, prints out some de...")
- 17:14, 31 October 2011 GenDBWiki/DeveloperDocumentation/SystemDesign (hist | edit) [1,341 bytes] Agoesman (talk | contribs) (Created page with "= The GenDB System Design = The figure below illustrates the architecture of the GenDB system with the main building blocks. attachment:GenDB-Overview.png On the server side ...")
- 14:29, 28 October 2011 GenDBWiki/WebDocumentation/DialogWindows/AnnotationDialog (hist | edit) [5,116 bytes] Agoesman (talk | contribs) (Created page with "= Annotation Dialog = In this section the manual annotation of a Region using the Web Interface is described. A description of the terms and concepts of the GenDB annotation co...")
- 13:34, 28 October 2011 GenDBWiki/WebDocumentation/MainMenu (hist | edit) [1,569 bytes] Tk (talk | contribs) (Created page with "__NOTOC__ = GenDB-Web - Main Menu = The main navigation in the Web Interface is done using the black menu bar in the main window. In the 'Contigs' menu all the contigs in the G...")
- 13:28, 28 October 2011 GenDBWiki/RolesAndRights (hist | edit) [4,072 bytes] Tk (talk | contribs) (Created page with "__NOTOC__ = GenDB Roles and Rights = This section describes the ''Roles'' and ''Rights'' as they were defined for the genome annotation system Gen``DB which extensively uses dif...")
- 13:26, 28 October 2011 GenDBWiki/ToolAndJobConcept (hist | edit) [5,200 bytes] Tk (talk | contribs) (Created page with "= The GenDB Tool and Job Concept = One major improvement of the Gen``DB system in comparison to the first version, is the modular concept for the integration of bioinformatics t...")
- 13:25, 28 October 2011 GenDBWiki/AnnotationConcepts (hist | edit) [6,104 bytes] Tk (talk | contribs) (Created page with "= Details about specific GenDB Concepts = The following sections illustrate some specific concepts that are implemented within the GenDB genome annotation system. Before you sta...")
- 13:17, 28 October 2011 GenDBWiki/TermsAndConcepts/GenDBAnnotationWorkflow (hist | edit) [3,285 bytes] Tk (talk | contribs) (Created page with "= A typical GenDB Annotation Workflow = The GenDB-2 system features all steps for the analysis and annotation of bacterial genomes starting from the raw contig sequence. The fig...")
- 13:11, 28 October 2011 GenDBWiki/DataModel (hist | edit) [1,031 bytes] Tk (talk | contribs) (Created page with "= The GenDB Data Model = Gen``DB is based on a data model with three core types of objects. ''Regions'' describe arbitrary (sub-) sequences. A region can be related to a parent ...")
- 13:09, 28 October 2011 GenDBWiki/IntroductionToGenomics (hist | edit) [14,650 bytes] Tk (talk | contribs) (Created page with "= A brief Introduction to Genomics Research = After James D. Watson and Francis H. C. Crick described the structure of the DNA helix in 1953, the basic mechanisms of DNA replica...")
- 07:09, 26 October 2011 Main Page (hist | edit) [2,328 bytes] MediaWiki default (talk)
